Read full paper at:
http://www.scirp.org/journal/PaperInformation.aspx?PaperID=52683#.VKC_7cCAM4
http://www.scirp.org/journal/PaperInformation.aspx?PaperID=52683#.VKC_7cCAM4
Author(s)
The structure of pure liquid tetrahydrofuran (THF)
has been investigated via Monte Carlo simulations in the wake of a
previous Empirical Potential Structure Refinement (EPSR) study on that
liquid (Bowron, D.T.; Finney, J.L.; Soper, A.K. (2006) J. Am. Chem.
Soc., 128, 5119). The molecules are allatoms rigid structures and the
intermolecular potential used is described for the classical 6-12
Lennard-Jones plus Coulomb in the NPT ensemble at 1 atm and 25°C. THF is
a poorly structured liquid. Typical preferred orientation of molecules
has been explored and calculations shown different types of molecular
pairs exist concurrently in the liquid. The geometry of those pairs was
deeply investigated and its influence in the liquid structure discussed.
The lack of molecular organization in the liquid is closely related to
the existence of that diversity of molecular pairs. Its geometry changes
from antiparallel up to T-like depending on the distance between the
molecules in the pairs.
Cite this paper
Borges, A. and Cordeiro, J. (2015) Detailing the Structure of Liquid THF Based on an EPSR Study. Computational Chemistry, 3, 1-7. doi: 10.4236/cc.2015.31001.
| [1] |
Cadioli, B., Gallinella, E.,
Coulombeau, C., Jobic, H. and Berthier, G. (1993) Geometric Structure
and Vibrational Spectrum of Tetrahydrofuran. The Journal of Physical
Chemistry, 97, 7844-7856.
http://dx.doi.org/10.1021/j100132a010 |
| [2] | Engerholm, G.G., Luntz, A.C. and Gwinn, W.D. (1969) Ring Puckering in Five-Membered Rings. II. The Microwave Spectrum, Dipole Moment, and Barrier to Pseudorotation in Tetrahydrofuran. The Journal of Physical Chemistry, 50, 2446. http://dx.doi.org/10.1063/1.1671401 |
| [3] |
Greenhouse, J. and Strauss, H.L.
(1969) Spectroscopic Evidence for Pseudorotation. II. The Far-Infrared
Spectra of Tetrahydrofuran and 1,3-Dioxolane. The Journal of Chemical
Physics, 50, 124. http://dx.doi.org/10.1063/1.1670769 |
| [4] | Rosas, R.L., Cooper, C. and Laane, J. (1990) Evaluation of Molecular Mechanics Methods for the Calculation of the Barriers to Planarity and Pseudorotation of Small Ring Molecules. The Journal of Physical Chemistry, 94, 1830-1836. http://dx.doi.org/10.1021/j100368a021 |
| [5] | Werawattanachai, N., Towiwat, P., Unchern, S. and Maher, T.J. (2007) Neuropharmacological Profile of Tetrahydrofuran in Mice. Life Sciences, 80, 1656-1663. http://dx.doi.org/10.1016/j.lfs.2007.01.050 |
| [6] | Bhatnagar, I. and Kim, S.K. (2010) Marine Antitumor Drugs: Status, Shortfalls and Strategies. Marine Drugs, 8, 2702-2720. http://dx.doi.org/10.3390/md8102702 |
| [7] | Lorente, A., Lamariano-Merketegi, J., Albericio, F. and Alvarez, M. (2013) Tetrahydrofuran Containing Macrolides: A Fascinating Gift from the Deep Sea. Chemical Reviews, 113, 4567-4610. |
| [8] | Jackson, K.L., Henderson, J.A. and Phillips, A.J. (2009) The Halichondrins and E7389. Chemical Reviews, 109, 3044-3079. http://dx.doi.org/10.1021/cr900016w |
| [9] |
Ledford, H. (2010) Complex Synthesis Yields Breast-Cancer Therapy. Nature, 468, 608-609.
http://dx.doi.org/10.1038/468608a |
| [10] | Ren, Y., Chai, H., Goetz, M. and Kinghorn, A.D. (2013) A Cytotoxic Decahydronaphthalenylpropenal Derivative and Tetrahydrofuran Lignans from the Stems of Cameraria latifolia. Tetrahedron Letters, 54, 4854-4858. http://dx.doi.org/10.1016/j.tetlet.2013.06.109 |
| [11] |
Chi, N.-J., Liu, Y. and Aisa,
H.A. (2012) Tetrahydrofuran Lignans and Flavonoids from Artemisia
absinthium. Chemistry of Natural Compounds, 48, 666-667. http://dx.doi.org/10.1007/s10600-012-0342-x |
| [12] |
Silva-Filho, A.A., Costa, E.S.,
Cunha, W.R., Silva, M.L.A., Nanayakkara, N.P.D. and Bastos, J.K. (2008)
In Vitro Antileishmanial and Antimalarial Activities of Tetrahydrofuran
Lignans Isolated from Nectandra megapotamica (Lauraceae). Phytotherapy
Research, 22, 1307-1310. http://dx.doi.org/10.1002/ptr.2486 |
| [13] | Royo, V.A., Santos, F.F., Souza, V.A., Pereira, A.C., Silva, R., Vinhólis, A.H.C., Donate, P.M., Silva, M.L.A., Albuquerque, S. and Bastos, J.K. (2003) Biological Activity Evaluation of Dibenzylbutyrolactone Lignans Derivatives against Leishmania braziliensis. Brazilian Journal of Pharmacognosy, 13, 18-21. |
| [14] | Souza, V.A., Silva, R., Pereira, A.C., Royo, V.D., Saraiva, J., Montanheiro, M., Souza, G.H.B., Silva, A.A., Grando, M.D., Donate, P.M., Bastos, J.K., Albuquerque, S. and Silva, M.L.A.E. (2005) Trypanocidal Activity of (?)-Cubebin Derivatives against Free Amastigote forms of Trypanosoma cruzi. Bioorganic & Medicinal Chemistry Letters, 15, 303-307. http://dx.doi.org/10.1016/j.bmcl.2004.10.079 |
| [15] | Neto, A.G., Silva, A.A., Costa, J.M.L.C., Vinholis, A.H.C., Souza, G.H.B., Cunha, W.R., Silva, M.L.A.E., Albuquerque, S. and Bastos, J.K. (2004) Evaluation of the Trypanocidal and Leishmanicidal in Vitro Activity of the Crude Hydroalcoholic Extract of Pfaffia glomerata (Amarathanceae) Roots. Phytomedicine, 11, 662-665. http://dx.doi.org/10.1016/j.phymed.2003.06.005 |
| [16] | Lepage, M., Letarte, S., Michaud, M., Motte-Tollet, F., Hubin-Franskin, M.J., Roy, D. and Sanche, L. (1998) Electron Spectroscopy of Resonance-Enhanced Vibrational Excitations of Gaseous and Solid Tetrahydrofuran. The Journal of Chemical Physics, 109, 5980. http://dx.doi.org/10.1063/1.477223 |
| [17] | Barthel, E.R., Martini, I.B. and Schwartz, B.J. (2000) Direct Observation of Charge-Transfer-to-Solvent (CTTS) Reactions: Ultrafast Dynamics of the Photoexcited Alkali Metal Anion Sodide (Na?). The Journal of Chemical Physics, 112, 9433. http://dx.doi.org/10.1063/1.481563 |
| [18] | Martini, I.B., Barthel, E.R. and Schwartz, B.J. (200) Mechanisms of the Ultrafast Production and Recombination of Solvated Electrons in Weakly Polar Fluids: Comparison of Multiphoton Ionization and Detachment via the Charge-Transfer-to-Solvent Transition of Na? in THF. The Journal of Chemical Physics, 113, 11245. http://dx.doi.org/10.1063/1.1328071 |
| [19] | Bedard-Hearn, M.J., Larsen, R.E. and Schwartz, B.J. (2005) The Role of Solvent Structure in the Absorption Spectrum of Solvated Electrons: Mixed Quantum/Classical Simulations in Tetrahydrofuran. The Journal of Chemical Physics, 122, Article ID: 134506. http://dx.doi.org/10.1063/1.1867378 |
| [20] |
Chandrasekhar, J. and Jorgensen,
W.L. (1982) Monte Carlo Simulations of Liquid Tetrahydrofuran including
Pseudorotation. The Journal of Chemical Physics, 77, 5073. http://dx.doi.org/10.1063/1.443681 |
| [21] |
Chandrasekhar, J. and Jorgensen,
W.L. (1982) The Nature of Dilute Solutions of Sodium Ion in Water,
Methanol, and Tetrahydrofuran. The Journal of Chemical Physics, 77,
5080. http://dx.doi.org/10.1063/1.443682 |
| [22] |
Bedard-Hearn, M.J., Larsen, R.E.
and Schwartz, B.J. (2003) Understanding Nonequilibrium Solute and
Solvent Motions through Molecular Projections: Computer Simulations of
Solvation Dynamics in Liquid Tetrahydrofuran (THF). The Journal of
Physical Chemistry B, 107, 14464-14475. http://dx.doi.org/10.1021/jp035846e |
| [23] |
Girard, S. and Muller-Plathe, F.
(2003) Molecular Dynamics Simulation of Liquid Tetrahydrofuran: On the
Uniqueness of Force Fields. Molecular Physics, 101, 779-787. http://dx.doi.org/10.1080/0026897021000054817 |
| [24] | Rayon, V.M. and Sordo, J.A. (2005) Pseudorotation Motion in Tetrahydrofuran: An Ab Initio Study. The Journal of Chemical Physics, 122, Article ID: 204303. http://dx.doi.org/10.1063/1.1899123 |
| [25] | Bowron, D.T., Finney, J.L. and Soper, A.K. (2006) The Structure of Liquid Tetrahydrofuran. Journal of the American Chemical Society, 128, 5119-5126. http://dx.doi.org/10.1021/ja0583057 |
| [26] |
Cordeiro, J.M.M. and Soper, A.K.
(2009) Neutron Diffraction Study of Liquid N-Methylformamide Using EPSR
Simulation. The Journal of Physical Chemistry B, 113, 6819-6825. http://dx.doi.org/10.1021/jp902053y |
| [27] |
Cordeiro, J.M.M. and Soper, A.K.
(2011) Investigation on the Structure of Liquid
N-Methylformamide-Dimethylsulfoxide Mixtures. Chemical Physics, 381,
21-28. http://dx.doi.org/10.1016/j.chemphys.2011.01.003 |
| [28] | Cordeiro, J.M.M. and Soper, A.K. (2013) A Hybrid Neutron Diffraction and Computer Simulation Study on the Solvation of N-Methylformamide in Dimethylsulfoxide. The Journal of Chemical Physics, 138, Article ID: 044502. http://dx.doi.org/10.1063/1.4773346 |
| [29] | Finney, J.L. and Soper, A.K. (1994) Solvent Structure and Perturbations in Solutions of Chemical and Biological Importance. Chemical Society Reviews, 23, 1-10. http://dx.doi.org/10.1039/cs9942300001 |
| [30] | Soper, A.K. (1996) Empirical Potential Monte Carlo Simulation of Fluid Structure. Chemical Physics, 202, 295-306. http://dx.doi.org/10.1016/0301-0104(95)00357-6 |
| [31] |
Soper, A.K. (1996) Partial
Structure Factors from Disordered Materials Diffraction Data: An
Approach Using Empirical Potential Structure Refinement. Physical Review
B, 72, Article ID: 104204.
http://dx.doi.org/10.1103/PhysRevB.72.104204 |
| [32] | Freitas, L.C.G. (2009) DIADORIM: A Monte Carlo Program for Liquid Simulations including Quantum Mechanics and Molecular Mechanics (QM/MM) Facilities: Applications to Liquid Ethanol. Journal of the Brazilian Chemical Society, 20, 1541-1548. http://dx.doi.org/10.1590/S0103-50532009000800022 |
| [33] | Allen, M. and Tildesley, D.J. (1987) Computer Simulation of Liquids. Oxford University Press, Oxford. |
| [34] | Tabor, D. (1968) Gases, Liquids and Solids. Penguin Library of Physical Sciences, Cambridge. |
| [35] |
Cordeiro, J.M.M. (2007)
Structure of Acetone and Dimethyl Sulfoxide from Monte Carlo Simulations
and MM2 Calculations. Physics and Chemistry of Liquids, 45, 31-39. http://dx.doi.org/10.1080/00319100600941748 |
| [36] |
Cordeiro, J.M.M. and Bosso,
A.R.S.A. (2010) Monte Carlo Studies of N-Methylformamide-Dimethyl
Sulfoxide Mixtures. Journal of Molecular Liquids, 154, 36-40. http://dx.doi.org/10.1016/j.molliq.2010.03.006 |
| [37] |
Almeida, G.G. and Cordeiro,
J.M.M. (2011) A Monte Carlo Revisiting of N-Methylformamide and Acetone.
Journal of the Brazilian Chemical Society, 22, 2178-2185. http://dx.doi.org/10.1590/S0103-50532011001100022 |
| [38] |
Borges, A. and Cordeiro, J.M.M.
(2013) Hydrogen Bonding Donation of N-Methylformamide with
Dimethylsulfoxide and Water. Chemical Physics Letters, 565, 40-44. http://dx.doi.org/10.1016/j.cplett.2013.02.017 eww141229lx |
评论
发表评论