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http://www.scirp.org/journal/PaperInformation.aspx?PaperID=53415#.VMG65izQrzE
Author(s)
Le Truong1, Hannah Lui Park1*, Seong Sil Chang1, Argyrios Ziogas1, Susan L. Neuhausen2, Sophia S. Wang2, Leslie Bernstein2, Hoda Anton-Culver1
Affiliation(s)
1Department of Epidemiology, Genetic Epidemiology Research Institute, University of California, Irvine, CA, USA.
2Division of Cancer Etiology, Department of Population Sciences, Beckman Research Institute, City of Hope, Duarte, CA, USA.
2Division of Cancer Etiology, Department of Population Sciences, Beckman Research Institute, City of Hope, Duarte, CA, USA.
ABSTRACT
Blood
samples have traditionally been used as the main source of DNA for
genetic analysis. How-ever, this source can be difficult in terms of
collection, transportation, and long-term storage. In this study, we
investigated whether human nail clippings could be used as a source of
DNA for SNP genotyping, null-allele detection, and whole-genome
amplification. From extracted nail DNA, we achieved amplicons up to a
length of ~400 bp and >96% concordance for SNP genotyping and 100%
concordance for null-allele detection compared to DNA derived from
matched blood sam-ples. For whole-genome amplification, OmniPlex
performed better than Multiple Displacement Amplification with a success
rate of 89.3% and 76.8% for SNP genotyping and null-allele detection,
respectively. Concordance was ~98% for both methods. When combined with
OmniPlex whole-genome amplification, human nail clippings could
potentially be used as an alternative to whole blood as a less invasive
and more convenient source of DNA for genotyping studies.
KEYWORDS
Cite this paper
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