A Comparative Study on the Structural and Vibrational Properties of Two Potential Antimicrobial and Anticancer Cyanopyridine Derivatives
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http://www.scirp.org/journal/PaperInformation.aspx?PaperID=52999#.VK8-6cnQrzE
ABSTRACT
2-Hydroxy-4,6-dimethylpyridine-3-carbonitrile
and 2-chloro-4,6-dimethylpyridine-3-carbonitrile compounds have been
studied from a theoretical point of view in order to know their
structural and vibrational properties in gas and aqueous solution phases
by means of Density Functional Theory (DFT) calculations. The stable
structures in both media were optimized by using the hybrid B3LYP/6-31G*
method and the solvent effects in aqueous solution were studied by
using the integral equation formalism of the polarizable continuum model
(IEFPCM) employing the selfconsistent reaction field (SCRF) method.
Detailed vibrational analyses for both compounds in the two phases were
performed combining the DFT calculations with Pulay’s Scaled Quantum
Mechanics Force Field (SQMFF) methodology. The different interactions
for both compounds were analyzed by means of the bond orders, atomic
charges, solvation energies, dipole moments, molecular electrostatic
potentials and force constants parameters. The nature of the
interactions was studied by using different descriptors.
Cite this paper
References
Márquez,
M. , Márquez, M. , Cataldo, P. and Brandán, S. (2015) A Comparative
Study on the Structural and Vibrational Properties of Two Potential
Antimicrobial and Anticancer Cyanopyridine Derivatives. Open Journal of Synthesis Theory and Applications, 4, 1-19. doi: 10.4236/ojsta.2015.41001.
[1] | Márquez,
M.B. and Brandán, S.A. (2014) A Structural and Vibrational
Investigation on the Antiviral Deoxyribonucleoside Thymidine Agent in
Gas and Aqueous Solution Phases. International Journal of Quantum
Chemistry, 114, 209-221. http://dx.doi.org/10.1002/qua.24545 |
[2] | Waly, M.A., EL-Hawary, I.I., Hamama, W.S. and Zoorob, H.H. (2013) Synthesis and Antitumor Evaluation of Some New Fused and Binary Pyridines. Journal of Heterocyclic Chemistry, 50, E12-E17. http://dx.doi.org/10.1002/jhet.1020 |
[3] | Hawas, U.W., Al-Omar, M.A., Amr, A.E. and Hammam, A.G. (2011) Anticancer Activity of Some New Synthesized Tetrahydroquinoline and Tetrahydrochromene Carbonitrile Derivatives. American Journal of Applied Sciences, 8, 945- 952. http://dx.doi.org/10.3844/ajassp.2011.945.952 |
[4] | Amr, A.E., Abdel-Hafez, N.A., Mohamed, S.F. and Abdulla, M.M. (2009) Synthesis, Reactions, and Antiarrhythmic Activities of Some Novel Pyrimidines and Pyridines Fused with Thiophene Moiety. Turkish Journal of Chemistry, 33, 421-432. |
[5] | Abdel-Hafez,
N.A., Mohamed, A.M., Amr, A.E. and Abdulla, M.M. (2009) Antiarrhythmic
Activities of Some Newly Synthesized Tricyclic and Tetracyclic
Thienopyridine Derivatives. Scientia Pharmaceutica, 77, 539-553. http://dx.doi.org/10.3797/scipharm.0905-06 |
[6] | Amr,
A.E., Abdulla, M.M. (2006) Synthesis and Anti-Inflammatory Activities
of New Cyanopyrane Derivatives Fused with Steroidal Nuclei. Archiv der
Pharmazie, 339, 88-95. http://dx.doi.org/10.1002/ardp.200500209 |
[7] | Amr, A.E., Sayed, H.H. and Abdulla, M.M. (2005) Synthesis and Reactions of Some New Substituted Pyridine and Pyrimidine Derivatives as Analgesic, Anticonvulsant and Antiparkinsonian Agents. Archiv der Pharmazie, 338, 433- 440. http://dx.doi.org/10.1002/ardp.200500982 |
[8] | Al-Omar,
M.A. and Amr, A.E. (2010) Synthesis of Some New
Pyridine-2,6-carboxamide-derived Schiff Bases as Potential Antimicrobial
Agents. Molecules, 15, 4711-4721. http://dx.doi.org/10.3390/molecules15074711 |
[9] | Yamada, T., Takahashi, H. and Hatano, R. (1999) Nicotinoid Insecticidas and the Nicotine Acetylcholine Receptor. Yamamoto, I. and Casida, J.E., Eds., Springer-Verlag: Hong Kong, 149. |
[10] | Singh,
T., Sharma, S., Srivastava, V.K. and Kumar, A. (2006) Synthesis and
Biological Evaluation of Some Pyra- zolinylpyridines and
Pyrazolylpyridines. Archiv der Pharmazie, 339, 24-31. http://dx.doi.org/10.1002/ardp.200500117 |
[11] | Metwally,
M.A., Abdel-Galil, E., Amer, F.A. and Abdallah, A.M. (2012) New
Thiazolidinones, Thiazolines and Thiopyrimidines from
3,5-Diphenylcyclohex-2-enone. American Journal of Organic Chemistry, 2,
28-34. http://dx.doi.org/10.5923/j.ajoc.20120201.06 |
[12] | Durham,
E.W., Siegfried, B.D. and Scharf, M.E. (2002) In Vivo and in Vitro
Metabolism of Fipronil by Larvae of the European Corn Borer Ostrinia
nubilalis. Pest Management Science, 58, 799-804. http://dx.doi.org/10.1002/ps.523 |
[13] | Thakkar, S.A. (2010) Studies on Bioactive Heterocycles and Other Moieties. Ph.D. Thesis, Saurashtra University, Rajkot. |
[14] | Mefetah,
H., Giorgi, M. and Brouant, P. (1997)
2-Anilino-4,6-dimethylpyridine-3-carbonitrile, an Intermediate in the
Synthesis of 5-Aminobenzo[b][1,8]naphthyridines. Acta Crystallographica
Section C, 53, 101-102. http://dx.doi.org/10.1107/S0108270196005276 |
[15] | Laing, M., Sparrow, N. and Sommerville, P. (1971) The Crystal Structure of 4-Cyanopyridine. Acta Crystallographica Section B, 27, 1986-1990. http://dx.doi.org/10.1107/S0567740871005211 |
[16] | Wang, Y.C. (2012) 4-Cyano-Pyridinium Dihydrogen Phosphate-Isonicotinonitrile-Phospho-Ric Acid (1/1/1). Acta Crystallographica Section E, 68, o1693-o1694. |
[17] | Daran,
J., Jeannin, Y. and Martin, L.M. (1979) 3-Cyanopyridinium
Tetrachloroferrate(III)-3-Cyanopyridine. Acta Crystallographica Section
B, 35, 3030-3032. http://dx.doi.org/10.1107/S0567740879011249 |
[18] | Fan, W.J., Zhang, R.Q. and Liu, S. (2007) Computation of Large Systems with an Economic Basis Set: Structures and Reactivity Indices of Nucleic Acid Base Pairs from Density Functional Theory. Journal of Computational Chemistry, 28, 967-974. http://dx.doi.org/10.1002/jcc.20670 |
[19] | Chattaraj,
P.K., Roy, D.R., Giri, S., Mukherjee, S., Subramanian, V.,
Parthasarathi, R., Bultinck, P. and Van Damme, S. (2007) An Atom
Counting and Electrophilicity Based QSTR Approach. Journal of Chemical
Sciences, 119, 475-488. http://dx.doi.org/10.1007/s12039-007-0061-1 |
[20] | Miertus,
S., Scrocco, E. and Tomasi, J. (1981) Electrostatic Interaction of a
Solute with a Continuum. A Direct Utilizaion of AB Initio Molecular
Potentials for the Prevision of Solvent Effects. Chemical Physics, 55,
117-129. http://dx.doi.org/10.1016/0301-0104(81)85090-2 |
[21] | Rauhut,
G. and Pulay, P. (1995) Transferable Scaling Factors for Density
Functional Derived Vibrational Force Fields. Journal of Physical
Chemistry, 99, 3093-3100. http://dx.doi.org/10.1021/j100010a019 |
[22] | Parr,
R.G. and Pearson, R.G. (1983) Absolute Hardness: Companion Parameter to
Absolute Electronegativity. Journal of the American Chemical Society,
105, 7512-7516. http://dx.doi.org/10.1021/ja00364a005 |
[23] | Reed,
A.E., Curtis, L.A. and Weinhold, F. (1988) Intermolecular Interactions
from a Natural Bond Orbital, Donor- Acceptor Viewpoint. Chemical
Reviews, 88, 899-926. http://dx.doi.org/10.1021/cr00088a005 |
[24] | Glendening, E.D., Badenhoop, J.K., Reed, A.D., Carpenter, J.E. and Weinhold, F. (1996) NBO 3.1. Theoretical Chemistry Institute, University of Wisconsin, Madison. |
[25] | Bader, R.F.W. (1990) Atoms in Molecules: A Quantum Theory. Oxford University Press, Oxford. |
[26] | Biegler-Köning, F., Schönbohm, J. and Bayles, D. (2001) AIM2000. Journal of Computational Chemistry, 22, 545-559. http://dx.doi.org/10.1002/1096-987X(20010415)22:5<545::AID-JCC1027>3.0.CO;2-Y |
[27] | Nielsen, A.B. and Holder, A.J. (2009) Gauss View 5.0, User’s Reference. GAUSSIAN Inc., Pittsburgh. |
[28] | Becke, A.D. (1993) Density-Functional Thermochemistry. III. The Role of Exact Exchange. Journal of Chemical Physics, 98, 5648-5652. http://dx.doi.org/10.1063/1.464913 |
[29] | Lee,
C., Yang, W. and Parr, R.G. (1988) Development of the Colle-Salvetti
Correlation-Energy Formula into a Functional of the Electron Density.
Physical Review B, 37, 785-789. http://dx.doi.org/10.1103/PhysRevB.37.785 |
[30] | Frisch, M.J., Trucks, G.W., Schlegel, H.B., Scuseria, G.E., Robb, M.A., Cheeseman, J.R., Montgomery Jr., J.A., Vreven, T., Kudin, K.N., Burant, J.C., Millam, J.M., Iyengar, S.S., Tomasi, J., Barone, V., Mennucci, B., Cossi, M., Scalmani, G., Rega, N., Petersson, G.A., Nakatsuji, H., Hada, M., Ehara, M., Toyota, K., Fukuda, R., Hasegawa, J., Ishida, M., Nakajima, T., Honda, Y., Kitao, O., Nakai, H., Klene, M., Li, X., Knox, J.E., Hratchian, H.P., Cross, J.B., Adamo, C., Jaramillo, J., Gomperts, R., Stratmann, R.E., Yazyev, O., Austin, A.J., Cammi, R., Pomelli, C., Ochterski, J.W., Ayala, P.Y., Morokuma, K., Voth, G.A., Salvador, P., Dannenberg, J.J., Zakrzewski, V.G., Dapprich, S., Daniels, A.D., Strain, M.C., Farkas, O., Malick, D.K., Rabuck, A.D., Raghavachari, K., Foresman, J.B., Ortiz, J.V., Cui, Q., Baboul, A.G., Clifford, S., Cioslowski, J., Stefanov, B.B., Liu, G., Liashenko, A., Piskorz, P., Komaromi, I., Martin, R.L., Fox, D.J., Keith, T., Al-Laham, M.A., Peng, C.Y., Nanayakkara, A., Challacombe, M., Gill, P.M.W., Johnson, B., Chen, W., Wong, M.W., Gonzalez, C. and Pople, J.A. (2009) Gaussian 09, Revision A. 02. Gaussian, Inc., Pittsburgh. |
[31] | Marenich,
A.V., Cramer, C.J. and Truhlar, D.G. (2009) Universal Solvation Model
Based on Solute Electron Density and on a Continuum Model of the Solvent
Defined by the Bulk Dielectric Constant and Atomic Surface Tensions.
Journal of Physical Chemistry B, 113, 6378-6396. http://dx.doi.org/10.1021/jp810292n |
[32] | Roldán,
M.L., Ledesma, A.E., Raschi, A.B., Castillo, M.V., Romano, E. and
Brandán, S.A. (2013) A New Experimental and Theoretical Investigation on
the Structures of Aminoethyl Phosphonic Acid in Aqueous Medium Based on
the Vibrational Spectra and DFT Calculations. Journal of Molecular
Structure, 1041, 73-81. http://dx.doi.org/10.1016/j.molstruc.2013.02.032 |
[33] | Guzzetti, K., Brizuela, A.B., Romano, E. and Brandán, S.A. (2013) Structural and Vibrational Study on Zwitterions of l-Threonine in Aqueous Phase Using the FT-Raman and SCRF Calculations. Journal of Molecular Structure, 1045, 171-179. http://dx.doi.org/10.1016/j.molstruc.2013.04.016 |
[34] | Bichara,
L.C. and Brandán, S.A. (2013) Hydration of Species Derived from
Ascorbic Acid in Aqueous Solution. An Experimental and Theoretical Study
by Using DFT Calculations. Journal of Molecular Liquids, 181, 34-43. http://dx.doi.org/10.1016/j.molliq.2013.02.009 |
[35] | Ugliengo, P. (1998) MOLDRAW Program. University of Torino, Dipartimento Chimica IFM, Torino. |
[36] | Besler, B.H., Merz Jr., K.M. and Kollman, P.A. (1990) Atomic Charges Derived from Semiempirical Methods. Journal of Computational Chemistry, 11, 431-439. http://dx.doi.org/10.1002/jcc.540110404 |
[37] | Sundius, T. (2002) Scaling of ab initio Force Fields by MOLVIB. Vibrational Spectroscopy, 29, 89-95. http://dx.doi.org/10.1016/S0924-2031(01)00189-8 |
[38] | FTIR spectrum of 2-Hydroxy-4,6-dimethylpyridine-3-carbonitrile from Aldrich No 303A99F2d01.pdf. |
[39] | FTIR spectrum of 3-Pyridinecarbonitrile, 2-chloro-4,6-dimethyl-from LookChem No 14237-71-9. |
[40] | Contreras,
C.D., Montejo, M., López González, J.J., Zinczuk, J. and Brandán, S.A.
(2011) Structural and Vibrational Analyses of
2-(2-Benzofuranyl)-2-imidazoline. Journal of Raman Spectroscopy, 42,
108-116. http://dx.doi.org/10.1002/jrs.2659 |
[41] | Contreras,
C.D., Ledesma, A.E., Zinczuk, J. and Brandán, S.A. (2011) Vibrational
Study of Tolazoline Hydrochloride by Using FTIR-Raman and DFT
Calculations. Spectrochimica Acta Part A, 79, 1710-1714. http://dx.doi.org/10.1016/j.saa.2011.05.041 |
[42] | Contreras, C.D., Montejo, M., López González, J.J., Zinczuk, J. and Brandán, S.A. (2011) Structural and Vibrational Analyses of 2-(-2-Benzofuranyl)-2-imidazoline. Journal of Raman Spectroscopy, 42, 108-116. |
[43] | Romano,
E., Raschi, A.B., Benavente, A. and Brandán, S.A. (2011) Structural
Analysis, Vibrational Spectra and Coordinated Normal of
2R-(-)-6-Hydroxytremetone. Spectrochimica Acta Part A, 84, 111-116. http://dx.doi.org/10.1016/j.saa.2011.09.011 |
[44] | Leyton, P., Brunet, J., Silva, V., Paipa, C., Castillo, M.V. and Brandán, S.A. (2012) An Experimental and Theoretical Study of l-Tryptophan in an Aqueous Solution, Combining Two-Layered ONIOM and SCRF Calculations. Spectrochimica Acta Part A, 88, 162-170. http://dx.doi.org/10.1016/j.saa.2011.12.023 |
[45] | Lizarraga,
E., Romano, E., Rudyk, R., Catalán, C.A.N. and Brandán, S.A. (2012)
Structural Study, Coordinated Normal Analysis and Vibrational Spectra of
4-Hydroxy-3-(3-methyl-2-butenyl)acetophenone. Spectrochimica Acta Part
A, 97, 202-208. http://dx.doi.org/10.1016/j.saa.2012.06.004 |
[46] | Leyton,
P., Paipa, C., Berrios, A., Zárate, A., Fuentes, S., Castillo, M.V. and
Brandán, S.A. (2013) Structural Study and Characterization of the
Dipeptide 2-[[5-Amino-5-oxo-2-(phenylmethoxycarbonylamino) Pentanoyl]
Amino] Acetic Acid by Vibrational Spectroscopy and DFT Calculations.
Journal of Molecular Structure, 1031, 110-118. http://dx.doi.org/10.1016/j.molstruc.2012.07.042 |
[47] | Piro, O.E., Echeverría, G.A., Lizarraga, E., Romano, E., Catalán, C.A.N. and Brandán, S.A. (2013) Molecular Structure of 4-hidroxy-3-(3-methyl-2-butenyl) Acetophenone, a Plant Antifungal, by X-Ray Diffraction, DFT Calculation, and NMR and FTIR Spectroscopy. Spectrochimica Acta Part A, 101, 196-203. http://dx.doi.org/10.1016/j.saa.2012.09.086 |
[48] | Romano, E., Brizuela, A.B., Guzzetti, K. and Brandán, S.A. (2013) An Experimental and Theoretical Study on the Hydration in Aqueous Medium of the Antihypertensive Agent Tolazoline Hydrochloride. Journal of Molecular Structure, 1037, 393-401. http://dx.doi.org/10.1016/j.molstruc.2013.01.028 |
[49] | Lizarraga, E., Romano, E., Raschi, A.B., Leyton, P., Paipa, C., Catalán, A.C.N. and Brandán, S.A. (2013) A Structural and Vibrational Study of Dehydrofukinone Combining FTIR, FTRaman, UV-Visible and NMR Spectroscopies with DFT Calculations. Journal of Molecular Structure, 1048, 331-338. http://dx.doi.org/10.1016/j.molstruc.2013.05.067 eww150109lx |
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